Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01812.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 734

Length: 1224
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:214 original size:2 final size:2

Alignment explanation


    Indices: 207--259  Score: 99
    Period size: 2  Copynumber: 27.0  Consensus size: 2

        197 AAAGGGGAAA

                                                                          
        207 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                             
        249 AG A- AG AG AG AG
          1 AG AG AG AG AG AG

        260 GAAAGGAATG


Statistics
Matches: 50,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   49  0.98

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Done.