Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01831.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1121
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:136 original size:22 final size:23

Alignment explanation


    Indices: 109--152  Score: 65
    Period size: 22  Copynumber: 2.0  Consensus size: 23

         99 TTTTCTTTCA

                                    
        109 TTTTCTATTTTT-TTC-CTTCCCT
          1 TTTTCT-TTTTTCTTCTCTTCCCT

                                  
        131 TTTTCTTTTTTCTTCTCTTCCC
          1 TTTTCTTTTTTCTTCTCTTCCC

        153 CCAGTTCCTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  21    5  0.25
  22    9  0.45
  23    6  0.30

ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68


Consensus pattern (23 bp):   
TTTTCTTTTTTCTTCTCTTCCCT
Done.