Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01846.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6074
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34


Found at i:4592 original size:40 final size:39

Alignment explanation


    Indices: 4538--4728  Score: 274
    Period size: 40  Copynumber: 4.8  Consensus size: 39

       4528 GGATGATAAC

                              *                    
       4538 CGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTAATT
          1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT

                                                     
       4577 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTT
          1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA-TT

                                      *        *    
       4618 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAATT
          1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAATT

                                  *               * 
       4658 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAAT
          1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT

               *   *                *      
       4698 CGGACTATGTCCCGAAGGCATTTGAGCGAGT
          1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT

       4729 AGCTATATCC


Statistics
Matches: 137,  Mismatches: 11, Indels: 6
        0.89            0.07        0.04

Matches are distributed among these distances:
  39    2  0.01
  40  130  0.95
  41    5  0.04

ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27


Consensus pattern (39 bp):   
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT

Done.