Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01850.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8455
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:3275 original size:15 final size:15

Alignment explanation


    Indices: 3255--3285  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3245 CTGTATCAGT

                           
       3255 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

                           
       3270 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

             
       3285 A
          1 A

       3286 CGGAACCGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AATGAATCAGAGCAC

Found at i:8031 original size:18 final size:18

Alignment explanation


    Indices: 8010--8052  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       8000 CCTTTCCCCC

                       *      
       8010 TTCTTTCATTTGTTTATT
          1 TTCTTTCATTTATTTATT

                   *          
       8028 TTCTTTCGTTTATTTATT
          1 TTCTTTCATTTATTTATT

             *     
       8046 TGCTTTC
          1 TTCTTTC

       8053 TTTTTATGCG


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70


Consensus pattern (18 bp):   
TTCTTTCATTTATTTATT
Done.