Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01852.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3105
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32


Found at i:108 original size:14 final size:14

Alignment explanation


    Indices: 86--119  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

         76 AATAGAAAAC

                *         
         86 TTTTCATCACTTTT
          1 TTTTTATCACTTTT

                          
        100 TTTTTATCACTTTT
          1 TTTTTATCACTTTT

             *    
        114 TCTTTA
          1 TTTTTA

        120 GCCTCCGGGC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68


Consensus pattern (14 bp):   
TTTTTATCACTTTT

Found at i:1458 original size:16 final size:16

Alignment explanation


    Indices: 1437--1487  Score: 93
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       1427 AAGAAAGAGC

                            
       1437 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

                            
       1453 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               *            
       1469 AAACACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               
       1485 AAA
          1 AAA

       1488 ATACTAGAAA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  16   34  1.00

ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22


Consensus pattern (16 bp):   
AAATACGCTAGTAAAT

Found at i:2427 original size:16 final size:17

Alignment explanation


    Indices: 2406--2439  Score: 61
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       2396 AATTAGAGAA

                             
       2406 TTCTATTTAA-TTCTAT
          1 TTCTATTTAATTTCTAT

                             
       2422 TTCTATTTAATTTCTAT
          1 TTCTATTTAATTTCTAT

             
       2439 T
          1 T

       2440 AAATCCATTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   10  0.59
  17    7  0.41

ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65


Consensus pattern (17 bp):   
TTCTATTTAATTTCTAT
Done.