Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01111.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3030
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30


Found at i:466 original size:12 final size:12

Alignment explanation


    Indices: 449--474  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        439 AGGTGAAATT

                        
        449 ATCTTTTACTAC
          1 ATCTTTTACTAC

                        
        461 ATCTTTTACTAC
          1 ATCTTTTACTAC

              
        473 AT
          1 AT

        475 GTTTCTAAGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50


Consensus pattern (12 bp):   
ATCTTTTACTAC
Done.