Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01860.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4166
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30


Found at i:549 original size:136 final size:137

Alignment explanation


    Indices: 303--588  Score: 493
    Period size: 136  Copynumber: 2.1  Consensus size: 137

        293 GAGTAGTCTC

                      *                                                      
        303 CCCAAATGGGTTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                       *                                   * 
        368 TGTTATCTGAATAAGGGGCTAAGGCCCGGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTATC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
        433 ACTGTTA
        131 ACTGTTA

                                    *                           *            
        440 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCTTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                    *                        
        504 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
        569 ACTGTTA
        131 ACTGTTA

              **         
        576 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

        589 AGGCCCAATG


Statistics
Matches: 141,  Mismatches: 8, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
 136  122  0.87
 137   19  0.13

ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Done.