Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01861.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2151
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34


Found at i:442 original size:19 final size:19

Alignment explanation


    Indices: 418--457  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        408 TTTTTTTTTT

                    *       *  
        418 ATTAGAATCGAAAAGTTTA
          1 ATTAGAATAGAAAAGTATA

                               
        437 ATTAGAATAGAAAAGTATA
          1 ATTAGAATAGAAAAGTATA

              
        456 AT
          1 AT

        458 AAAAGTTTAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30


Consensus pattern (19 bp):   
ATTAGAATAGAAAAGTATA

Found at i:1978 original size:16 final size:16

Alignment explanation


    Indices: 1957--1989  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1947 TCTTATTCCT

                       *    
       1957 TTGCTACTATAGAATA
          1 TTGCTACTATAAAATA

                            
       1973 TTGCTACTATAAAATA
          1 TTGCTACTATAAAATA

             
       1989 T
          1 T

       1990 AGAATACCGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39


Consensus pattern (16 bp):   
TTGCTACTATAAAATA
Done.