Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01872.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3390
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35


Found at i:2607 original size:53 final size:53

Alignment explanation


    Indices: 2471--2659  Score: 197
    Period size: 52  Copynumber: 3.6  Consensus size: 53

       2461 ATGTGATACA

                           *                        **         * 
       2471 TGATTCCGTATAAGAACATAGCCGGGCTATGGCATTGGTACCATGTGATT-CG
          1 TGATTCCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG

                                   *            *   *             
       2523 T-ATTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATGTGATTATG
          1 TGATT-CCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG

                                *     *                 * *      
       2576 TGATTCCGTATAAGACCATATCCGGGATATGGCATTGGTATGATATCA-TATG
          1 TGATTCCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG

               *     *         * **          
       2628 TG-GTCCGTGTAAGACCATGGTAGGGCTATGGC
          1 TGATTCCGTATAAGACCATAGCCGGGCTATGGC

       2660 TTCGGTGTGT


Statistics
Matches: 113,  Mismatches: 21, Indels: 7
        0.80            0.15        0.05

Matches are distributed among these distances:
  51   26  0.23
  52   46  0.41
  53   38  0.34
  54    3  0.03

ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30


Consensus pattern (53 bp):   
TGATTCCGTATAAGACCATAGCCGGGCTATGGCATTGGTATGATGTGATTATG

Found at i:2658 original size:51 final size:52

Alignment explanation


    Indices: 2528--2665  Score: 129
    Period size: 53  Copynumber: 2.6  Consensus size: 52

       2518 ATTCGTATTC

                            *                 *    * *         * 
       2528 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGATGTGATTATGTGATT
          1 CCGTATAAGACCAT-GATGGGCTATGGCATCGGTATGATATCATTATGTGAGT

                                  *        *                      
       2581 CCGTATAAGACCAT-ATCCGGGATATGGCATTGGTATGATATCA-TATGTG-GT
          1 CCGTATAAGACCATGAT--GGGCTATGGCATCGGTATGATATCATTATGTGAGT

                *          *            *     
       2632 CCGTGTAAGACCATGGTAGGGCTATGGCTTCGGT
          1 CCGTATAAGACCATGAT-GGGCTATGGCATCGGT

       2666 GTGTGATGTG


Statistics
Matches: 69,  Mismatches: 13, Indels: 8
        0.77            0.14        0.09

Matches are distributed among these distances:
  51   28  0.41
  52    7  0.10
  53   34  0.49

ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30


Consensus pattern (52 bp):   
CCGTATAAGACCATGATGGGCTATGGCATCGGTATGATATCATTATGTGAGT
Done.