Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01880.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3271
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:804 original size:26 final size:26

Alignment explanation


    Indices: 765--817  Score: 97
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        755 TGCAAAGGTT

                     *                
        765 TGTAATAATGCTCGAAAACTATTCTG
          1 TGTAATAATACTCGAAAACTATTCTG

                                      
        791 TGTAATAATACTCGAAAACTATTCTG
          1 TGTAATAATACTCGAAAACTATTCTG

             
        817 T
          1 T

        818 CTTTTTTTTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36


Consensus pattern (26 bp):   
TGTAATAATACTCGAAAACTATTCTG
Done.