Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01882.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1426
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:87 original size:6 final size:6

Alignment explanation


    Indices: 35--87  Score: 51
    Period size: 5  Copynumber: 9.2  Consensus size: 6

         25 TTAACATAGG

                                                                     
         35 AAAGAA AAAGGCAA AAA-AA AAA-AA AAAG-A AAA-AA AAAGAA AAAGAA
          1 AAAGAA AAA-G-AA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA

              *     
         81 AATGAA A
          1 AAAGAA A

         88 GAGAGAAGTG


Statistics
Matches: 41,  Mismatches: 1, Indels: 10
        0.79            0.02        0.19

Matches are distributed among these distances:
   5   18  0.44
   6   17  0.41
   7    1  0.02
   8    5  0.12

ACGTcount: A:0.83, C:0.02, G:0.13, T:0.02


Consensus pattern (6 bp):   
AAAGAA

Found at i:89 original size:16 final size:16

Alignment explanation


    Indices: 35--82  Score: 69
    Period size: 16  Copynumber: 2.9  Consensus size: 16

         25 TTAACATAGG

                              
         35 AAAGAAAAAGGCAAAAAA
          1 AAAGAAAAA-G-AAAAAA

               *            
         53 AAAAAAAAAGAAAAAA
          1 AAAGAAAAAGAAAAAA

                          
         69 AAAGAAAAAGAAAA
          1 AAAGAAAAAGAAAA

         83 TGAAAGAGAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  16   19  0.68
  17    1  0.04
  18    8  0.29

ACGTcount: A:0.85, C:0.02, G:0.12, T:0.00


Consensus pattern (16 bp):   
AAAGAAAAAGAAAAAA
Done.