Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01884.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 495

Length: 826
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33


Found at i:181 original size:15 final size:15

Alignment explanation


    Indices: 159--195  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        149 GCACCAACAG

                            
        159 CACCACCCACATCATC
          1 CACCACCCACATC-TC

                           
        175 C-CCACCCACATCTC
          1 CACCACCCACATCTC

                   
        189 CACCACC
          1 CACCACC

        196 GCCAGCTGCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  14    3  0.15
  15   16  0.80
  16    1  0.05

ACGTcount: A:0.27, C:0.62, G:0.00, T:0.11


Consensus pattern (15 bp):   
CACCACCCACATCTC

Found at i:228 original size:6 final size:6

Alignment explanation


    Indices: 209--283  Score: 105
    Period size: 6  Copynumber: 12.5  Consensus size: 6

        199 AGCTGCTACT

                     *       *                                  *  
        209 CCAACC CCGACC CCATCC CCAACC CCAACC CCAACC CCAACC CCATCC
          1 CCAACC CCAACC CCAACC CCAACC CCAACC CCAACC CCAACC CCAACC

               *      *                    
        257 CCATCC CCATCC CCAACC CCAACC CCA
          1 CCAACC CCAACC CCAACC CCAACC CCA

        284 TCTGCATCTC


Statistics
Matches: 63,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   63  1.00

ACGTcount: A:0.27, C:0.67, G:0.01, T:0.05


Consensus pattern (6 bp):   
CCAACC

Found at i:307 original size:30 final size:30

Alignment explanation


    Indices: 209--285  Score: 127
    Period size: 30  Copynumber: 2.6  Consensus size: 30

        199 AGCTGCTACT

                    *            *        
        209 CCAACCCCGACCCCATCCCCAACCCCAACC
          1 CCAACCCCAACCCCATCCCCATCCCCAACC

                                       *  
        239 CCAACCCCAACCCCATCCCCATCCCCATCC
          1 CCAACCCCAACCCCATCCCCATCCCCAACC

                             
        269 CCAACCCCAACCCCATC
          1 CCAACCCCAACCCCATC

        286 TGCATCTCCA


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  30   44  1.00

ACGTcount: A:0.26, C:0.66, G:0.01, T:0.06


Consensus pattern (30 bp):   
CCAACCCCAACCCCATCCCCATCCCCAACC
Done.