Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01889.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1147
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34


Found at i:37 original size:26 final size:26

Alignment explanation


    Indices: 1--53  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

                                      
          1 ATGGGTTAGGTAAATGTTTCATGATA
          1 ATGGGTTAGGTAAATGTTTCATGATA

                                      
         27 ATGGGTTAGGTAAATGTTTCATGATA
          1 ATGGGTTAGGTAAATGTTTCATGATA

             
         53 A
          1 A

         54 GAATATCATG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38


Consensus pattern (26 bp):   
ATGGGTTAGGTAAATGTTTCATGATA
Done.