Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01896.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5338
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32


Found at i:4624 original size:40 final size:40

Alignment explanation


    Indices: 4567--4730  Score: 168
    Period size: 40  Copynumber: 4.1  Consensus size: 40

       4557 TGAATGATAC

                      * *        *  *               
       4567 CCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATTATAT
          1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT

                                 *      *            
       4607 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
          1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTATAT

                 *  *                   *   * ** *  
       4647 CCGGGTTAGGACCCGAAGGCAATTGTGCAAGTTACCAAAT
          1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT

                 *                       *   *      
       4687 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
          1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT

                
       4727 CCGG
          1 CCGG

       4731 TTGAATCCCG


Statistics
Matches: 102,  Mismatches: 20, Indels: 4
        0.81            0.16        0.03

Matches are distributed among these distances:
  39    1  0.01
  40   99  0.97
  41    2  0.02

ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27


Consensus pattern (40 bp):   
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Done.