Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01903.P4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5155
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36


Found at i:971 original size:72 final size:72

Alignment explanation


    Indices: 893--1031  Score: 278
    Period size: 72  Copynumber: 1.9  Consensus size: 72

        883 AGAGGGAGGA

                                                                             
        893 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
          1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG

                   
        958 GTGTTGT
         66 GTGTTGT

                                                                             
        965 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
          1 ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG

              
       1030 GT
         66 GT

       1032 ACATTTTTTT


Statistics
Matches: 67,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  72   67  1.00

ACGTcount: A:0.17, C:0.20, G:0.20, T:0.42


Consensus pattern (72 bp):   
ACTCTCTGCCTTTTCGGGTTTTCTGTGATATTGAAATCTCCTTCTACATCGGATAGTGATTTCAG
GTGTTGT

Found at i:1760 original size:78 final size:78

Alignment explanation


    Indices: 1631--1782  Score: 232
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       1621 CTCATATTCT

                       *             *        *                         *    
       1631 ACCATTAAACCGTGATCCCTTGATCTCACCAACTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

                         
       1696 ACCATGGAGTTCG
         66 ACCATGGAGTTCG

                                        *  *          *                *     
       1709 ACCATTAAACCCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC

                     
       1774 ACCATGGAG
         66 ACCATGGAG

       1783 GATTCTCAGA


Statistics
Matches: 66,  Mismatches: 8, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  78   66  1.00

ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Consensus pattern (78 bp):   
ACCATTAAACCCTGATCCCTTGATCGCACCAACTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Done.