Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01908.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4651
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:4371 original size:19 final size:18

Alignment explanation


    Indices: 4335--4373  Score: 51
    Period size: 19  Copynumber: 2.1  Consensus size: 18

       4325 TTAGAATATT

                       * *    
       4335 AAATATTATAATTTTTTA
          1 AAATATTATAACTATTTA

                               
       4353 AAATATTAATAACTATTTA
          1 AAATATT-ATAACTATTTA

              
       4372 AA
          1 AA

       4374 CACTTAGTAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  18    7  0.39
  19   11  0.61

ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46


Consensus pattern (18 bp):   
AAATATTATAACTATTTA
Done.