Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01944.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 317

Length: 529
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23


Found at i:474 original size:23 final size:23

Alignment explanation


    Indices: 438--485  Score: 60
    Period size: 23  Copynumber: 2.1  Consensus size: 23

        428 GGTTAGGTTC

                  *  *        *    
        438 CCGGCGGTGCTCCGACGATCCAT
          1 CCGGCGATGATCCGACGAGCCAT

                          *        
        461 CCGGCGATGATCCGGCGAGCCAT
          1 CCGGCGATGATCCGACGAGCCAT

              
        484 CC
          1 CC

        486 CGGGATACAC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.15, C:0.40, G:0.31, T:0.15


Consensus pattern (23 bp):   
CCGGCGATGATCCGACGAGCCAT
Done.