Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01953.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 453

Length: 756
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.23


Found at i:687 original size:24 final size:24

Alignment explanation


    Indices: 648--701  Score: 72
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        638 CCGGTTAGGT

                    *  *        *   
        648 TCCCGGCGGTGCTCCGACGATCCA
          1 TCCCGGCGATGATCCGACGAGCCA

                            *       
        672 TCCCGGCGATGATCCGGCGAGCCA
          1 TCCCGGCGATGATCCGACGAGCCA

                  
        696 TCCCGG
          1 TCCCGG

        702 GATACACAAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15


Consensus pattern (24 bp):   
TCCCGGCGATGATCCGACGAGCCA
Done.