Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01965.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32


Found at i:605 original size:28 final size:26

Alignment explanation


    Indices: 574--648  Score: 69
    Period size: 26  Copynumber: 2.8  Consensus size: 26

        564 AAAAGCAGCT

                                      * 
        574 AAATTACTATAATACCCCTATGTATGGA
          1 AAATTACTATAATACCCCTA-G-ATGCA

                 *  * *          *    
        602 AAATTTCTGTTATACCCCTAGGTGCA
          1 AAATTACTATAATACCCCTAGATGCA

                   * *           
        628 AAATTACCAAAATACCCCTAG
          1 AAATTACTATAATACCCCTAG

        649 GGTTAAATTG


Statistics
Matches: 37,  Mismatches: 10, Indels: 2
        0.76            0.20        0.04

Matches are distributed among these distances:
  26   19  0.51
  27    1  0.03
  28   17  0.46

ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29


Consensus pattern (26 bp):   
AAATTACTATAATACCCCTAGATGCA
Done.