Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01124.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9974
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33


Found at i:6754 original size:17 final size:17

Alignment explanation


    Indices: 6728--6763  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       6718 TCAGATTTTA

                             
       6728 AAGTTCCTGATTTGACT
          1 AAGTTCCTGATTTGACT

                 *           
       6745 AAGTTTCTGATTTGACT
          1 AAGTTCCTGATTTGACT

              
       6762 AA
          1 AA

       6764 CTCAGCATTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42


Consensus pattern (17 bp):   
AAGTTCCTGATTTGACT
Done.