Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00425.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2340
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37


Found at i:1320 original size:21 final size:21

Alignment explanation


    Indices: 1291--1338  Score: 87
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1281 ACTGCAAAAC

                *                
       1291 TAAGAAATCTACAGCATTCTT
          1 TAAGGAATCTACAGCATTCTT

                                 
       1312 TAAGGAATCTACAGCATTCTT
          1 TAAGGAATCTACAGCATTCTT

                  
       1333 TAAGGA
          1 TAAGGA

       1339 GTTTGAATGC


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.38, C:0.17, G:0.15, T:0.31


Consensus pattern (21 bp):   
TAAGGAATCTACAGCATTCTT
Done.