Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01149.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 356

Length: 594
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28


Found at i:417 original size:64 final size:64

Alignment explanation


    Indices: 316--436  Score: 233
    Period size: 64  Copynumber: 1.9  Consensus size: 64

        306 ACAGGGGTTG

                         *                                                  
        316 CACGGGTGAGGACGTAGACTGGGACAGACCGTATGTCCCTAGTTCGAAGGTTACACTAGAGTCA
          1 CACGGGTGAGGACATAGACTGGGACAGACCGTATGTCCCTAGTTCGAAGGTTACACTAGAGTCA

                                                                     
        380 CACGGGTGAGGACATAGACTGGGACAGACCGTATGTCCCTAGTTCGAAGGTTACACT
          1 CACGGGTGAGGACATAGACTGGGACAGACCGTATGTCCCTAGTTCGAAGGTTACACT

        437 GCCTGAGACA


Statistics
Matches: 56,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  64   56  1.00

ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21


Consensus pattern (64 bp):   
CACGGGTGAGGACATAGACTGGGACAGACCGTATGTCCCTAGTTCGAAGGTTACACTAGAGTCA
Done.