Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01184.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5323
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:4599 original size:10 final size:10

Alignment explanation


    Indices: 4584--4609  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       4574 AGTACACGTG

                      
       4584 AAACGTGTGC
          1 AAACGTGTGC

                      
       4594 AAACGTGTGC
          1 AAACGTGTGC

                  
       4604 AAACGT
          1 AAACGT

       4610 CTAAACTGAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19


Consensus pattern (10 bp):   
AAACGTGTGC
Done.