Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01185.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3550
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29


Found at i:1648 original size:12 final size:12

Alignment explanation


    Indices: 1631--1671  Score: 52
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       1621 CCACTGTTTT

                        
       1631 CCTGTTTTGGAA
          1 CCTGTTTTGGAA

                       *
       1643 CCTGTTTT---T
          1 CCTGTTTTGGAA

                        
       1652 CCTGTTTTGGAA
          1 CCTGTTTTGGAA

                    
       1664 CCTGTTTT
          1 CCTGTTTT

       1672 TCCTATCTCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 6
        0.75            0.06        0.19

Matches are distributed among these distances:
   9    8  0.33
  12   16  0.67

ACGTcount: A:0.10, C:0.20, G:0.20, T:0.51


Consensus pattern (12 bp):   
CCTGTTTTGGAA

Found at i:1653 original size:21 final size:21

Alignment explanation


    Indices: 1627--1675  Score: 98
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1617 ACAGCCACTG

                                 
       1627 TTTTCCTGTTTTGGAACCTGT
          1 TTTTCCTGTTTTGGAACCTGT

                                 
       1648 TTTTCCTGTTTTGGAACCTGT
          1 TTTTCCTGTTTTGGAACCTGT

                   
       1669 TTTTCCT
          1 TTTTCCT

       1676 ATCTCCACTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.08, C:0.20, G:0.16, T:0.55


Consensus pattern (21 bp):   
TTTTCCTGTTTTGGAACCTGT
Done.