Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01191.F27

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2958
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26


Found at i:1076 original size:24 final size:24

Alignment explanation


    Indices: 1033--1078  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       1023 CATAGCCCCA

                        * *         
       1033 AAACACAAAAAGCAGGCATCTAAG
          1 AAACACAAAAAGAACGCATCTAAG

                           *      
       1057 AAACACAAAAAGAACTCATCTA
          1 AAACACAAAAAGAACGCATCTA

       1079 CAGGTCCTGC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.57, C:0.22, G:0.11, T:0.11


Consensus pattern (24 bp):   
AAACACAAAAAGAACGCATCTAAG
Done.