Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01201.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 499

Length: 833
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30


Found at i:330 original size:37 final size:37

Alignment explanation


    Indices: 265--373  Score: 148
    Period size: 37  Copynumber: 2.9  Consensus size: 37

        255 TGATCAGAAA

                          *        *             
        265 AACCCATCTCCTCCGTCGCCTTCTCCCCGTGCATCGC
          1 AACCCATCTCCTCCATCGCCTTCACCCCGTGCATCGC

               *               *                  
        302 AACTCAT-TCCCTCCATCGTCTTCACCCCGTGCATCGC
          1 AACCCATCT-CCTCCATCGCCTTCACCCCGTGCATCGC

                                   *   *       
        339 AACCCATCTCCTCCATCGCCTTCGCCCTGTGCATC
          1 AACCCATCTCCTCCATCGCCTTCACCCCGTGCATC

        374 TGCTGCATAG


Statistics
Matches: 62,  Mismatches: 8, Indels: 4
        0.84            0.11        0.05

Matches are distributed among these distances:
  36    1  0.02
  37   60  0.97
  38    1  0.02

ACGTcount: A:0.14, C:0.49, G:0.12, T:0.26


Consensus pattern (37 bp):   
AACCCATCTCCTCCATCGCCTTCACCCCGTGCATCGC
Done.