Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00034.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2152
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.33


Found at i:338 original size:4 final size:4

Alignment explanation


    Indices: 329--360  Score: 55
    Period size: 4  Copynumber: 8.0  Consensus size: 4

        319 AATGCACCAG

                                             *     
        329 GTAT GTAT GTAT GTAT GTAT GTAT GTAA GTAT
          1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT

        361 CAAGGCGAAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   4   26  1.00

ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47


Consensus pattern (4 bp):   
GTAT

Done.