Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01221.M4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8173
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:7571 original size:45 final size:42

Alignment explanation


    Indices: 7489--7571  Score: 94
    Period size: 45  Copynumber: 1.9  Consensus size: 42

       7479 TTTCTTGTTG

                                        *   *         
       7489 CTTTTCTTCTTTTCTCGTTCTTTCTTCTTAAAGTCTTGGATC
          1 CTTTTCTTCTTTTCTCGTTCTTTCTTCTCAAACTCTTGGATC

                          *  *              *        
       7531 CTTTTCTTCTCTTTTTCTTTCTTCTTCTTCTCCAACTCTTG
          1 CTTTTCTTCT-TTTCTCGTTC-T-TTCTTCTCAAACTCTTG

       7572 AATTCGATTC


Statistics
Matches: 33,  Mismatches: 5, Indels: 3
        0.80            0.12        0.07

Matches are distributed among these distances:
  42   10  0.30
  43    8  0.24
  44    1  0.03
  45   14  0.42

ACGTcount: A:0.07, C:0.28, G:0.06, T:0.59


Consensus pattern (42 bp):   
CTTTTCTTCTTTTCTCGTTCTTTCTTCTCAAACTCTTGGATC
Done.