Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01227.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1984
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:1005 original size:106 final size:107

Alignment explanation


    Indices: 803--1010  Score: 276
    Period size: 106  Copynumber: 2.0  Consensus size: 107

        793 AGTTTGGTCT

                             *           *                                   
        803 TTATTATATCCTTTTTCCTGGGGTAGCTATCATTTTGGTTAAAAAAACTTAATACTTAATGATCT
          1 TTATTATATCCTTTTTCATGGGGTAGCTACCATTTTGGTTAAAAAAACTTAATACTTAATGATCT

               *                     **               
        868 CTCCTCTTTGCTTTTGGCAAAACATGGTGATAGCTTTAGCCA
         66 CTCATCTTTGCTTTTGGCAAAACATAATGATAGCTTTAGCCA

                     *                                   ***   *          *  
        910 TTATTATATGCTTTTTCAT-GGGTGAGCTACCATTTTGGTTAAAATTGCTTTA-ACTTAATGGTC
          1 TTATTATATCCTTTTTCATGGGGT-AGCTACCATTTTGGTTAAAAAAACTTAATACTTAATGATC

               *                  *               
        973 TCTTATCTTTGCTTTTGGCAAAGCATAATGATAGCTTT
         65 TCTCATCTTTGCTTTTGGCAAAACATAATGATAGCTTT

       1011 GGCTGAGGCC


Statistics
Matches: 87,  Mismatches: 13, Indels: 3
        0.84            0.13        0.03

Matches are distributed among these distances:
 106   47  0.54
 107   40  0.46

ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43


Consensus pattern (107 bp):   
TTATTATATCCTTTTTCATGGGGTAGCTACCATTTTGGTTAAAAAAACTTAATACTTAATGATCT
CTCATCTTTGCTTTTGGCAAAACATAATGATAGCTTTAGCCA
Done.