Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01232.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3199
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37


Found at i:76 original size:2 final size:2

Alignment explanation


    Indices: 63--92  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

         53 AGGAAGAGGC

                      *                                 
         63 AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

         93 CGGGGAAAAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00


Consensus pattern (2 bp):   
AG

Done.