Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01255.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1851
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:1587 original size:20 final size:20

Alignment explanation


    Indices: 1551--1588  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1541 GAAACCAAGA

                     *          
       1551 AAGAAACTACAAATTGAACC
          1 AAGAAACTAAAAATTGAACC

                               
       1571 AAGAAAC-AAAAAGTTGAA
          1 AAGAAACTAAAAA-TTGAA

       1589 TATAGACTGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  19    4  0.25
  20   12  0.75

ACGTcount: A:0.61, C:0.13, G:0.13, T:0.13


Consensus pattern (20 bp):   
AAGAAACTAAAAATTGAACC
Done.