Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01260.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1849
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:104 original size:6 final size:6

Alignment explanation


    Indices: 88--130  Score: 77
    Period size: 6  Copynumber: 7.2  Consensus size: 6

         78 ACCCATACGA

                   *                                          
         88 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
          1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T

        131 AGTTTTGAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49


Consensus pattern (6 bp):   
TCCCTT

Found at i:905 original size:22 final size:23

Alignment explanation


    Indices: 854--906  Score: 67
    Period size: 22  Copynumber: 2.4  Consensus size: 23

        844 AGAAAACCAT

                                   
        854 TTTAT-GTGTTAAATGCTAAAAA
          1 TTTATGGTGTTAAATGCTAAAAA

                               **  
        876 TTTA-GGTGTTAAATGCT-GCAA
          1 TTTATGGTGTTAAATGCTAAAAA

                      
        897 TTTATGGTGT
          1 TTTATGGTGT

        907 CTGAAAGTTG


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  21    6  0.22
  22   21  0.78

ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43


Consensus pattern (23 bp):   
TTTATGGTGTTAAATGCTAAAAA
Done.