Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01265.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1082
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34


Found at i:1066 original size:87 final size:88

Alignment explanation


    Indices: 912--1081  Score: 209
    Period size: 87  Copynumber: 1.9  Consensus size: 88

        902 ATTAAGTCTA

                     *  *       *                                        *** 
        912 TTTTTTCACTCATTTGGATATTTGAACTTTCAAAATACATCAAAAAAACCCTCAAACCTT-GTCA
          1 TTTTTTCACACAATTGGATACTTGAACTTTCAAAATACATCAAAAAAACCCTCAAACCTTAAAAA

                                   
        976 AAAAAGCAATTAAGCCCCTATCT
         66 AAAAAGCAATTAAGCCCCTATCT

                                                *         *   *     **       
        999 TTTTTTCACACAATTGGATACTTGAACTTTCAAAATTCATCAAAAAGACCTTC-AATTTTAAAAA
          1 TTTTTTCACACAATTGGATACTTGAACTTTCAAAATACATCAAAAAAACCCTCAAACCTT--AAA

                               
       1063 AAAAAAAGCAATTAAGCCC
         64 AAAAAAAGCAATTAAGCCC

       1082 A


Statistics
Matches: 69,  Mismatches: 11, Indels: 4
        0.82            0.13        0.05

Matches are distributed among these distances:
  86    4  0.06
  87   47  0.68
  89   18  0.26

ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31


Consensus pattern (88 bp):   
TTTTTTCACACAATTGGATACTTGAACTTTCAAAATACATCAAAAAAACCCTCAAACCTTAAAAA
AAAAAGCAATTAAGCCCCTATCT
Done.