Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01295.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2305
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30


Found at i:34 original size:6 final size:6

Alignment explanation


    Indices: 23--68  Score: 83
    Period size: 6  Copynumber: 7.7  Consensus size: 6

         13 ACCCATGTTG

                           *                                     
         23 CTCTCC CTCTCC CACTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCT
          1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCT

         69 TTCTAAAGTT


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   38  1.00

ACGTcount: A:0.02, C:0.65, G:0.00, T:0.33


Consensus pattern (6 bp):   
CTCTCC

Found at i:254 original size:3 final size:3

Alignment explanation


    Indices: 246--282  Score: 74
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        236 TCTCTAACTA

                                                             
        246 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C

        283 GTGTACTTGA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65


Consensus pattern (3 bp):   
CTT

Found at i:1075 original size:3 final size:3

Alignment explanation


    Indices: 1067--1096  Score: 60
    Period size: 3  Copynumber: 10.0  Consensus size: 3

       1057 CCTTAATCCC

                                                   
       1067 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA

       1097 CCCCCACCCC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33


Consensus pattern (3 bp):   
TCA

Done.