Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01309.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 558

Length: 930
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.25


Found at i:58 original size:6 final size:6

Alignment explanation


    Indices: 23--56  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

         13 GCCCTATAGC

                 *                          *      
         23 AGCAGC AGCAGA AGCAGA AGCAGA AGCAAA AGCA
          1 AGCAGA AGCAGA AGCAGA AGCAGA AGCAGA AGCA

         57 AAGGGTTTAG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.50, C:0.21, G:0.29, T:0.00


Consensus pattern (6 bp):   
AGCAGA
Done.