Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01317.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3732
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34


Found at i:2047 original size:5 final size:5

Alignment explanation


    Indices: 2039--2072  Score: 59
    Period size: 5  Copynumber: 6.8  Consensus size: 5

       2029 TTGTGCAGTT

                *                                   
       2039 TTTTT TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
          1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT

       2073 ACAACATTTG


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   5   28  1.00

ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85


Consensus pattern (5 bp):   
TTTTC

Done.