Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01321.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 329

Length: 549
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32


Found at i:187 original size:6 final size:6

Alignment explanation


    Indices: 171--238  Score: 64
    Period size: 6  Copynumber: 11.3  Consensus size: 6

        161 TGCTGGCGCC

                          *         *             *      *      *  
        171 GCTCCA GCTCCA TCTCCA GCTTCA GCTCCA GCTGCA GCTGCA GCTTCA
          1 GCTCCA GCTCCA GCTCCA GCTCCA GCTCCA GCTCCA GCTCCA GCTCCA

               *      *      *     
        219 GCTTCA GCTTCA GCTTCA GC
          1 GCTCCA GCTCCA GCTCCA GC

        239 ATCTGCCCCA


Statistics
Matches: 56,  Mismatches: 6, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   56  1.00

ACGTcount: A:0.16, C:0.40, G:0.19, T:0.25


Consensus pattern (6 bp):   
GCTCCA

Found at i:198 original size:18 final size:18

Alignment explanation


    Indices: 175--238  Score: 74
    Period size: 18  Copynumber: 3.6  Consensus size: 18

        165 GGCGCCGCTC

                    *         
        175 CAGCTCCATCTCCAGCTT
          1 CAGCTCCAGCTCCAGCTT

                       *     *
        193 CAGCTCCAGCTGCAGCTG
          1 CAGCTCCAGCTCCAGCTT

                 *     *      
        211 CAGCTTCAGCTTCAGCTT
          1 CAGCTCCAGCTCCAGCTT

                 *    
        229 CAGCTTCAGC
          1 CAGCTCCAGC

        239 ATCTGCCCCA


Statistics
Matches: 40,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   40  1.00

ACGTcount: A:0.17, C:0.39, G:0.19, T:0.25


Consensus pattern (18 bp):   
CAGCTCCAGCTCCAGCTT
Done.