Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01322.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 327

Length: 546
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30


Found at i:214 original size:12 final size:12

Alignment explanation


    Indices: 184--256  Score: 58
    Period size: 12  Copynumber: 6.2  Consensus size: 12

        174 CTGGCTGCTG

                        
        184 GCTCC-GCTCCA
          1 GCTCCAGCTCCA

                        
        195 GCTCCAGCTCCA
          1 GCTCCAGCTCCA

             * *     *  
        207 GGTGCAGCTTCA
          1 GCTCCAGCTCCA

               *     *  
        219 GCTTCAGCTTCA
          1 GCTCCAGCTCCA

               *     *  
        231 GCTTCAGCTTCA
          1 GCTCCAGCTCCA

               *     *  
        243 GCTTCAGCTTCA
          1 GCTCCAGCTCCA

              
        255 GC
          1 GC

        257 AGCTGCCCCA


Statistics
Matches: 56,  Mismatches: 5, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  11    5  0.09
  12   51  0.91

ACGTcount: A:0.15, C:0.38, G:0.21, T:0.26


Consensus pattern (12 bp):   
GCTCCAGCTCCA

Found at i:220 original size:6 final size:6

Alignment explanation


    Indices: 211--256  Score: 92
    Period size: 6  Copynumber: 7.7  Consensus size: 6

        201 GCTCCAGGTG

                                                                 
        211 CAGCTT CAGCTT CAGCTT CAGCTT CAGCTT CAGCTT CAGCTT CAGC
          1 CAGCTT CAGCTT CAGCTT CAGCTT CAGCTT CAGCTT CAGCTT CAGC

        257 AGCTGCCCCA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.17, C:0.35, G:0.17, T:0.30


Consensus pattern (6 bp):   
CAGCTT

Done.