Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01325.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3027
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34


Found at i:1574 original size:7 final size:7

Alignment explanation


    Indices: 1564--1593  Score: 60
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       1554 GGGAATGGAT

                   
       1564 TAGGGAG
          1 TAGGGAG

                   
       1571 TAGGGAG
          1 TAGGGAG

                   
       1578 TAGGGAG
          1 TAGGGAG

                   
       1585 TAGGGAG
          1 TAGGGAG

              
       1592 TA
          1 TA

       1594 ATTTGGCTGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.30, C:0.00, G:0.53, T:0.17


Consensus pattern (7 bp):   
TAGGGAG

Found at i:2314 original size:83 final size:84

Alignment explanation


    Indices: 2170--2339  Score: 261
    Period size: 83  Copynumber: 2.0  Consensus size: 84

       2160 CTTTTTTATG

                                                   *       *                 
       2170 GGGTAGAAATAGTCAAGGTATGACCAACATGTTTAATGATAGGAAATGGTACATTTATTTGAAGT
          1 GGGTAGAAATAGTCAAGGTATGACCAACATGTTTAATGACAGGAAATAGTACATTTATTTGAAGT

                               
       2235 TTTATTTATTTTACTAATT
         66 TTTATTTATTTTACTAATT

                                   **                               *        
       2254 GGGTAGAAATAGT-AAGGTATGATTAACATGTTTAATGACAGGAAATAGTACATTTTTTTGAAGT
          1 GGGTAGAAATAGTCAAGGTATGACCAACATGTTTAATGACAGGAAATAGTACATTTATTTGAAGT

                   *    *  *   
       2318 TTTATTTGTTTTGCTCATT
         66 TTTATTTATTTTACTAATT

               
       2337 GGG
          1 GGG

       2340 GCTGAGATTA


Statistics
Matches: 78,  Mismatches: 8, Indels: 1
        0.90            0.09        0.01

Matches are distributed among these distances:
  83   65  0.83
  84   13  0.17

ACGTcount: A:0.32, C:0.06, G:0.21, T:0.40


Consensus pattern (84 bp):   
GGGTAGAAATAGTCAAGGTATGACCAACATGTTTAATGACAGGAAATAGTACATTTATTTGAAGT
TTTATTTATTTTACTAATT
Done.