Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01327.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 324

Length: 540
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39


Found at i:358 original size:23 final size:22

Alignment explanation


    Indices: 324--366  Score: 59
    Period size: 23  Copynumber: 1.9  Consensus size: 22

        314 GGTAGATTCC

                                  
        324 TTTTTTTCTTTTCTTTTCTTTT
          1 TTTTTTTCTTTTCTTTTCTTTT

                    *    *       
        346 TTTTTTTAGTTTTGTTTTCTT
          1 TTTTTTT-CTTTTCTTTTCTT

        367 GCTGTGAAAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  22    7  0.39
  23   11  0.61

ACGTcount: A:0.02, C:0.09, G:0.05, T:0.84


Consensus pattern (22 bp):   
TTTTTTTCTTTTCTTTTCTTTT
Done.