Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01350.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4219
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:135 original size:13 final size:13

Alignment explanation


    Indices: 117--141  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        107 TTAATTCATA

                         
        117 TTTTTCTTTTTTT
          1 TTTTTCTTTTTTT

                        
        130 TTTTTCTTTTTT
          1 TTTTTCTTTTTT

        142 CTGATTTCTT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92


Consensus pattern (13 bp):   
TTTTTCTTTTTTT
Done.