Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01364.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 909

Length: 1516
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1247 original size:44 final size:44

Alignment explanation


    Indices: 1184--1272  Score: 178
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1174 CATCAGCTAG

                                                        
       1184 TGTTGAACATGAAGCCAGAACCTCTAAAACTGGTGAAGATATGC
          1 TGTTGAACATGAAGCCAGAACCTCTAAAACTGGTGAAGATATGC

                                                        
       1228 TGTTGAACATGAAGCCAGAACCTCTAAAACTGGTGAAGATATGC
          1 TGTTGAACATGAAGCCAGAACCTCTAAAACTGGTGAAGATATGC

             
       1272 T
          1 T

       1273 ACTTTCAACA


Statistics
Matches: 45,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   45  1.00

ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24


Consensus pattern (44 bp):   
TGTTGAACATGAAGCCAGAACCTCTAAAACTGGTGAAGATATGC
Done.