Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gbar_D04G011570.3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3077
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28


Found at i:2414 original size:30 final size:31

Alignment explanation


    Indices: 2378--2443  Score: 89
    Period size: 34  Copynumber: 2.1  Consensus size: 31

       2368 ATTGGGACTC

                                    *      
       2378 TTAGATTAGAG-TTGTCTCTCAACGTGTTTT
          1 TTAGATTAGAGTTTGTCTCTCAACATGTTTT

                                              
       2408 TTAGATTAGAGTTACTTGTCTCTCAACATGTTTT
          1 TTAGATTAGAG-T--TTGTCTCTCAACATGTTTT

              
       2442 TT
          1 TT

       2444 CTTTGTTTCG


Statistics
Matches: 31,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  30   11  0.35
  34   20  0.65

ACGTcount: A:0.21, C:0.14, G:0.17, T:0.48


Consensus pattern (31 bp):   
TTAGATTAGAGTTTGTCTCTCAACATGTTTT

Found at i:2799 original size:3 final size:3

Alignment explanation


    Indices: 2791--2816  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       2781 GCAATCAGAC

                                              
       2791 TAT TAT TAT TAT TAT TAT TAT TAT TA
          1 TAT TAT TAT TAT TAT TAT TAT TAT TA

       2817 GATTTAGTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (3 bp):   
TAT

Done.