Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gbar_D02G008730.2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3932
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:347 original size:25 final size:24

Alignment explanation


    Indices: 303--351  Score: 62
    Period size: 25  Copynumber: 2.0  Consensus size: 24

        293 TTTCATCTTA

                   *       *         
        303 TTTTTGTTATTATTATTTTTCTTTC
          1 TTTTTGTAATTATTACTTTT-TTTC

                          *         
        328 TTTTTGTAATTATTCCTTTTTTTC
          1 TTTTTGTAATTATTACTTTTTTTC

        352 CCGGAAAATA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  24    4  0.19
  25   17  0.81

ACGTcount: A:0.12, C:0.10, G:0.04, T:0.73


Consensus pattern (24 bp):   
TTTTTGTAATTATTACTTTTTTTC
Done.