Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: CotAD_26336

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25


Found at i:1046 original size:6 final size:6

Alignment explanation


    Indices: 1035--1068  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       1025 ACTGTAGTGC

                                                   
       1035 AGATGA AGATGA AGATGA AGATGA AGATGA AGAT
          1 AGATGA AGATGA AGATGA AGATGA AGATGA AGAT

       1069 TATGAAATCG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18


Consensus pattern (6 bp):   
AGATGA

Done.