Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: CotAD_13408

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3087
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27


Found at i:2869 original size:111 final size:111

Alignment explanation


    Indices: 2675--2896  Score: 444
    Period size: 111  Copynumber: 2.0  Consensus size: 111

       2665 CCAATAGCTT

                                                                             
       2675 ACTCTCAGGCACAATTCATTATGAGCATGAGCAATGCAGCTGCTGGTTTAAATGGTTCAGGCCCC
          1 ACTCTCAGGCACAATTCATTATGAGCATGAGCAATGCAGCTGCTGGTTTAAATGGTTCAGGCCCC

                                                          
       2740 TCGCGGCCTAATTTTGACCTGAATTCCAGATTAGCAATTGAGGGAG
         66 TCGCGGCCTAATTTTGACCTGAATTCCAGATTAGCAATTGAGGGAG

                                                                             
       2786 ACTCTCAGGCACAATTCATTATGAGCATGAGCAATGCAGCTGCTGGTTTAAATGGTTCAGGCCCC
          1 ACTCTCAGGCACAATTCATTATGAGCATGAGCAATGCAGCTGCTGGTTTAAATGGTTCAGGCCCC

                                                          
       2851 TCGCGGCCTAATTTTGACCTGAATTCCAGATTAGCAATTGAGGGAG
         66 TCGCGGCCTAATTTTGACCTGAATTCCAGATTAGCAATTGAGGGAG

       2897 GAAATACAGA


Statistics
Matches: 111,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 111  111  1.00

ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27


Consensus pattern (111 bp):   
ACTCTCAGGCACAATTCATTATGAGCATGAGCAATGCAGCTGCTGGTTTAAATGGTTCAGGCCCC
TCGCGGCCTAATTTTGACCTGAATTCCAGATTAGCAATTGAGGGAG
Done.