Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: CotAD_25568

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 246

Length: 411
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25


Found at i:367 original size:57 final size:57

Alignment explanation


    Indices: 111--367  Score: 338
    Period size: 57  Copynumber: 4.5  Consensus size: 57

        101 GTCCTAGTCC

                                        *                   *      **
        111 AGGAGGCAAAGGTCATGCATTTAGTGATTCTGTCACCACCAATTCAGGGCCAAGTTC
          1 AGGAGGCAAAGGTCATGCATTTAGTGATGCTGTCACCACCAATTCAGGTCCAAGTGA

            *  *                *                     *            **
        168 TGGTGGCAAAGGTCATGCATATAGTGATGCTGTCACCACCAACTCAGGTCCAAGTCC
          1 AGGAGGCAAAGGTCATGCATTTAGTGATGCTGTCACCACCAATTCAGGTCCAAGTGA

                  *                *                                  
        225 AGGAGGTAAAGGTCATGCATTTACTGATGCTGTCAACC-CCAATTCAGGTCCAAGTGA
          1 AGGAGGCAAAGGTCATGCATTTAGTGATGCTGTC-ACCACCAATTCAGGTCCAAGTGA

               *                   *                                  
        282 AGGCGGCAAAGGTCATGCATTTACTGATGCTGTCAACC-CCAATTCAGGTCCAAGTGA
          1 AGGAGGCAAAGGTCATGCATTTAGTGATGCTGTC-ACCACCAATTCAGGTCCAAGTGA

                            * *          
        339 AGGAGGCAAAGGTCATTCGTTTAGTGATG
          1 AGGAGGCAAAGGTCATGCATTTAGTGATG

        368 TCGTCACGAA


Statistics
Matches: 178,  Mismatches: 21, Indels: 2
        0.89            0.10        0.01

Matches are distributed among these distances:
  57  175  0.98
  58    3  0.02

ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24


Consensus pattern (57 bp):   
AGGAGGCAAAGGTCATGCATTTAGTGATGCTGTCACCACCAATTCAGGTCCAAGTGA

Done.