Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: CotAD_76217

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 324

Length: 540
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25


Found at i:499 original size:5 final size:5

Alignment explanation


    Indices: 489--537  Score: 55
    Period size: 5  Copynumber: 9.4  Consensus size: 5

        479 AAGAGAAAAC

                                                   *                
        489 AAAGA AAAGA AAAGA AAAGA AAAGGCA AAAGA AGA-A AAAGAA AAAGA
          1 AAAGA AAAGA AAAGA AAAGA AAA-G-A AAAGA AAAGA AAAG-A AAAGA

              
        536 AA
          1 AA

        538 TAA


Statistics
Matches: 38,  Mismatches: 2, Indels: 8
        0.79            0.04        0.17

Matches are distributed among these distances:
   4    3  0.08
   5   24  0.63
   6    7  0.18
   7    4  0.11

ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00


Consensus pattern (5 bp):   
AAAGA

Done.