Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A08G072100.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2504
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30


Found at i:93 original size:7 final size:7

Alignment explanation


    Indices: 81--115  Score: 70
    Period size: 7  Copynumber: 5.0  Consensus size: 7

         71 TTTGCCCCCT

                   
         81 TTCTCTC
          1 TTCTCTC

                   
         88 TTCTCTC
          1 TTCTCTC

                   
         95 TTCTCTC
          1 TTCTCTC

                   
        102 TTCTCTC
          1 TTCTCTC

                   
        109 TTCTCTC
          1 TTCTCTC

        116 ATATTTGCTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   28  1.00

ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57


Consensus pattern (7 bp):   
TTCTCTC

Done.