Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Gohir.A08G197600.1.v1.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 509

Length: 849
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28


Found at i:188 original size:33 final size:33

Alignment explanation


    Indices: 141--320  Score: 324
    Period size: 33  Copynumber: 5.5  Consensus size: 33

        131 TGGCCCAGCC

                  *  *                       
        141 CTCGCCAGCCCCAGCCCCTTCACCCGGTACACA
          1 CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA

                                         *   
        174 CTCGCCCGCGCCAGCCCCTTCACCCGGTATACA
          1 CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA

                                             
        207 CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA
          1 CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA

                                             
        240 CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA
          1 CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA

                                    *        
        273 CTCGCCCGCGCCAGCCCCTTCACCTGGTACACA
          1 CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA

                           
        306 CTCGCCCGCGCCAGC
          1 CTCGCCCGCGCCAGC

        321 ACCATTTAAT


Statistics
Matches: 142,  Mismatches: 5, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  33  142  1.00

ACGTcount: A:0.15, C:0.54, G:0.18, T:0.13


Consensus pattern (33 bp):   
CTCGCCCGCGCCAGCCCCTTCACCCGGTACACA

Done.